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CircRNA Cell-Type Specific Expression
Use criteria below to search among 11,682 circRNAs:
*Click CircRNA to view comprehensive information in new page.
*CircRNA IDs are unique identifiers assigned to each circRNA in the format of
“chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices”
*Myeloid Cells from Lee et al. and Macrophages from Li et al. are considered the same cell type; Endothelial Cells and Fibroblasts from Li et al. are considered as subtypes of Stromal Cells from Lee et al. Cell-type specificity is based on the consensus of both models.
CircRNA* | Cell-Type Specificity | CRAMS ID | Differential Expression Status | Cell Line Expression | DE Support by Other Tools | Cell-Type Specificity Support by circSC |
|---|---|---|---|---|---|---|
chr2|235740962|235750488|+|3|circRNA|AGAP1|ENST00000409457.5|4,5,6 | Not cell-type specific | N/A | Not differentially expressed | HT29,LoVo,SW480,SW620 | Not differentially expressed | Not cell-type specific |
chr2|235797758|235807331|+|3|circRNA|AGAP1|ENST00000409457.5|7,8,9 | Not cell-type specific | N/A | Not differentially expressed | HCT116,LoVo,SW480,SW620 | Not differentially expressed | Not cell-type specific |
chr2|235930764|235968623|+|2|circRNA|AGAP1|NM_001037131|12,13 | Not cell-type specific | N/A | Not differentially expressed | HCT116,SW480,SW620 | Not differentially expressed | Not cell-type specific |
chr2|237325559|237344843|-|8|circRNA|COL6A3|ENST00000353578.8|42,41,40,39,38,37,36,35 | Not cell-type specific | N/A | Not differentially expressed | Not expressed in cell lines | Not differentially expressed | Not cell-type specific |
chr2|23754178|23765628|-|5|circRNA|ATAD2B|ENST00000238789.9|27,26,25,24,23 | Not cell-type specific | N/A | Not differentially expressed | Not expressed in cell lines | Not differentially expressed | Not cell-type specific |
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