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CircRNA Cell-Type Specific Expression
Use criteria below to search among 11,682 circRNAs:
*Click CircRNA to view comprehensive information in new page.
*CircRNA IDs are unique identifiers assigned to each circRNA in the format of
“chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices”
*Myeloid Cells from Lee et al. and Macrophages from Li et al. are considered the same cell type; Endothelial Cells and Fibroblasts from Li et al. are considered as subtypes of Stromal Cells from Lee et al. Cell-type specificity is based on the consensus of both models.
CircRNA* | Cell-Type Specificity | CRAMS ID | Differential Expression Status | Cell Line Expression | DE Support by Other Tools | Cell-Type Specificity Support by circSC |
|---|---|---|---|---|---|---|
chr2|48461137|48465642|+|3|circRNA|PPP1R21|ENST00000431614.5|7,8,9 | Stromal cells | N/A | Not differentially expressed | Not expressed in cell lines | Not differentially expressed | Not supported |
chr2|48479923|48498735|+|5|circRNA|PPP1R21|ENST00000431614.5|13,14,15,16,17 | Not cell-type specific | N/A | Not differentially expressed | Not expressed in cell lines | Not differentially expressed | Not cell-type specific |
chr2|48498492|48507385|+|3|circRNA|PPP1R21|ENST00000431614.5|17,18,19 | Not cell-type specific | N/A | Not differentially expressed | HCT116 | Not differentially expressed | Not cell-type specific |
chr2|48498492|48511468|+|5|circRNA|PPP1R21|ENST00000416913.5|17,18,19,20,21 | Not cell-type specific | N/A | Not differentially expressed | HCT116,LoVo | Not differentially expressed | Not cell-type specific |
chr2|48580586|48582563|+|1|circRNA|STON1-GTF2A1L|ENST00000405008.5|2 | Not cell-type specific | N/A | Not differentially expressed | Not expressed in cell lines | Not differentially expressed | Not cell-type specific |
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