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CircRNA Cell-Type Specific Expression
Use criteria below to search among 11,682 circRNAs:
*Click CircRNA to view comprehensive information in new page.
*CircRNA IDs are unique identifiers assigned to each circRNA in the format of
“chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices”
*Myeloid Cells from Lee et al. and Macrophages from Li et al. are considered the same cell type; Endothelial Cells and Fibroblasts from Li et al. are considered as subtypes of Stromal Cells from Lee et al. Cell-type specificity is based on the consensus of both models.
CircRNA* | Cell-Type Specificity | CRAMS ID | Differential Expression Status | Cell Line Expression | DE Support by Other Tools | Cell-Type Specificity Support by circSC |
|---|---|---|---|---|---|---|
chr2|96289036|96291900|-|7|circRNA|SNRNP200|ENST00000323853.9|23,22,21,20,19,18,17 | Not cell-type specific | N/A | Not differentially expressed | Not expressed in cell lines | Not differentially expressed | Not cell-type specific |
chr2|96612646|96612817|-|1|ciRNA|KANSL3|NR_047658|7 | Not cell-type specific | N/A | Not differentially expressed | Not expressed in cell lines | Not differentially expressed | Not cell-type specific |
chr2|96619671|96628084|-|3|circRNA|KANSL3|ENST00000447759.5|5,4,3 | Not cell-type specific | N/A | Not differentially expressed | Not expressed in cell lines | Not differentially expressed | Not cell-type specific |
chr2|97158106|97167767|+|7|circRNA|ANKRD36|ENST00000461153.6|16,17,18,19,20,21,22 | Not cell-type specific | N/A | Not differentially expressed | HCT116,SW480 | Not differentially expressed | Not cell-type specific |
chr2|97200452|97209709|+|10|circRNA|ANKRD36|ENST00000461153.6|46,47,48,49,50,51,52,53,54,55 | Epithelial cells | N/A | Not differentially expressed | Not expressed in cell lines | Not differentially expressed | Not supported |
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