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CircRNA Cell-Type Specific Expression
Use criteria below to search among 11,682 circRNAs:
*Click CircRNA to view comprehensive information in new page.
*CircRNA IDs are unique identifiers assigned to each circRNA in the format of
“chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices”
*Myeloid Cells from Lee et al. and Macrophages from Li et al. are considered the same cell type; Endothelial Cells and Fibroblasts from Li et al. are considered as subtypes of Stromal Cells from Lee et al. Cell-type specificity is based on the consensus of both models.
CircRNA* | Cell-Type Specificity | CRAMS ID | Differential Expression Status | Cell Line Expression | DE Support by Other Tools | Cell-Type Specificity Support by circSC |
|---|---|---|---|---|---|---|
chr20|49880923|49884066|+|2|circRNA|SLC9A8|ENST00000417961.5|13,14 | Not cell-type specific | N/A | Not differentially expressed | HCT116 | Not differentially expressed | Not cell-type specific |
chr20|49908154|49908592|-|1|circRNA|SPATA2|NM_001135773|2 | Not cell-type specific | N/A | Not differentially expressed | Not expressed in cell lines | Not differentially expressed | Not cell-type specific |
chr20|49945381|49949355|+|3|circRNA|RNF114|ENST00000623528.3|2,3,4 | Not cell-type specific | N/A | Not differentially expressed | HCT116,HT29,SW480 | Not differentially expressed | Not cell-type specific |
chr20|505117|508660|-|2|circRNA|CSNK2A1|ENST00000400227.7|3,2 | Not cell-type specific | N/A | Not differentially expressed | HT29 | Not differentially expressed | Not cell-type specific |
chr20|5106187|5109445|-|2|circRNA|TMEM230|ENST00000615008.4|4,3 | Not cell-type specific | N/A | Not differentially expressed | HT29 | Not differentially expressed | Not cell-type specific |
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