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TMECircDB

The Maher Lab | Washington University

CircRNA Cell-Type Specific Expression

Use criteria below to search among 11,682 circRNAs:

*Click CircRNA to view comprehensive information in new page.

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​*CircRNA IDs are unique identifiers assigned to each circRNA in the format of

“chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices”

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*Myeloid Cells from Lee et al. and Macrophages from Li et al. are considered the same cell type; Endothelial Cells and Fibroblasts from Li et al. are considered as subtypes of Stromal Cells from Lee et al. Cell-type specificity is based on the consensus of both models.

CircRNA*
Cell-Type Specificity
CRAMS ID
Differential Expression Status
Cell Line Expression
DE Support by Other Tools
Cell-Type Specificity Support by circSC
chr22|26540788|26544675|-|2|circRNA|TPST2|ENST00000338754.8|3,2
Not cell-type specific
N/A
Not differentially expressed
Not expressed in cell lines
Not differentially expressed
Not cell-type specific
chr22|27894554|27914347|-|6|circRNA|PITPNB|NM_001284278|7,6,5,4,3,2
Not cell-type specific
N/A
Not differentially expressed
HCT116,LoVo,SW480,SW620
Not differentially expressed
Not cell-type specific
chr22|28163091|28306643|-|4|circRNA|TTC28|ENST00000397906.6|6,5,4,3
Not cell-type specific
N/A
Not differentially expressed
Not expressed in cell lines
Not differentially expressed
Not cell-type specific
chr22|28296197|28297852|-|2|circRNA|TTC28|ENST00000612946.4|3,2
Not cell-type specific
N/A
Not differentially expressed
Not expressed in cell lines
Not differentially expressed
Not cell-type specific
chr22|28296197|28306643|-|3|circRNA|TTC28|ENST00000397906.6|5,4,3
Not cell-type specific
N/A
Not differentially expressed
Not expressed in cell lines
Not differentially expressed
Not cell-type specific
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