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CircRNA Cell-Type Specific Expression
Use criteria below to search among 11,682 circRNAs:
*Click CircRNA to view comprehensive information in new page.
*CircRNA IDs are unique identifiers assigned to each circRNA in the format of
“chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices”
*Myeloid Cells from Lee et al. and Macrophages from Li et al. are considered the same cell type; Endothelial Cells and Fibroblasts from Li et al. are considered as subtypes of Stromal Cells from Lee et al. Cell-type specificity is based on the consensus of both models.
CircRNA* | Cell-Type Specificity | CRAMS ID | Differential Expression Status | Cell Line Expression | DE Support by Other Tools | Cell-Type Specificity Support by circSC |
|---|---|---|---|---|---|---|
chr22|20933778|20934244|+|1|circRNA|CRKL|ENST00000354336.7|2 | Not cell-type specific | N/A | Not differentially expressed | HCT116,HT29,LoVo,SW480,SW620 | Not differentially expressed | Not cell-type specific |
chr22|20974816|20975672|+|1|ciRNA|AIFM3|ENST00000399167.6|8 | Not cell-type specific | N/A | Not differentially expressed | Not expressed in cell lines | Not differentially expressed | Not cell-type specific |
chr22|21669912|21684913|+|9|circRNA|PPIL2|NM_014337|2,3,4,5,6,7,8,9,10 | Not cell-type specific | N/A | Not differentially expressed | Not expressed in cell lines | Not differentially expressed | Not cell-type specific |
chr22|21788256|21807846|-|5|circRNA|MAPK1|ENST00000215832.10|6,5,4,3,2 | Not cell-type specific | N/A | Not differentially expressed | LoVo | Not differentially expressed | Not cell-type specific |
chr22|21799011|21807846|-|3|circRNA|MAPK1|ENST00000215832.10|4,3,2 | Not cell-type specific | N/A | Not differentially expressed | HCT116,HT29,LoVo,SW480,SW620 | Not differentially expressed | Not cell-type specific |
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