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CircRNA Cell-Type Specific Expression
Use criteria below to search among 11,682 circRNAs:
*Click CircRNA to view comprehensive information in new page.
*CircRNA IDs are unique identifiers assigned to each circRNA in the format of
“chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices”
*Myeloid Cells from Lee et al. and Macrophages from Li et al. are considered the same cell type; Endothelial Cells and Fibroblasts from Li et al. are considered as subtypes of Stromal Cells from Lee et al. Cell-type specificity is based on the consensus of both models.
CircRNA* | Cell-Type Specificity | CRAMS ID | Differential Expression Status | Cell Line Expression | DE Support by Other Tools | Cell-Type Specificity Support by circSC |
|---|---|---|---|---|---|---|
chr3|12574791|12576741|+|2|circRNA|MKRN2|NM_001271707|4,5 | Not cell-type specific | N/A | Not differentially expressed | HT29,SW480 | Not differentially expressed | Not cell-type specific |
chr3|125848229|125848447|-|1|circRNA|RP11-379B18.5|ENST00000622381.4|2 | Not cell-type specific | N/A | Not differentially expressed | Not expressed in cell lines | Not differentially expressed | Not cell-type specific |
chr3|126146834|126161002|-|6|circRNA|ALDH1L1|NM_001270365|7,6,5,4,3,2 | Not cell-type specific | N/A | Not differentially expressed | SW480 | Not differentially expressed | Not cell-type specific |
chr3|126150405|126161002|-|5|circRNA|ALDH1L1|NM_001270365|6,5,4,3,2 | Myeloid Cells | N/A | Not differentially expressed | Not expressed in cell lines | Not differentially expressed | Not supported |
chr3|126459652|126472305|-|6|circRNA|ZXDC|ENST00000389709.7|7,6,5,4,3,2 | Myeloid Cells | N/A | Not differentially expressed | HCT116,HT29,SW620 | Not differentially expressed | Not supported |
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