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CircRNA Cell-Type Specific Expression
Use criteria below to search among 11,682 circRNAs:
*Click CircRNA to view comprehensive information in new page.
*CircRNA IDs are unique identifiers assigned to each circRNA in the format of
“chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices”
*Myeloid Cells from Lee et al. and Macrophages from Li et al. are considered the same cell type; Endothelial Cells and Fibroblasts from Li et al. are considered as subtypes of Stromal Cells from Lee et al. Cell-type specificity is based on the consensus of both models.
CircRNA* | Cell-Type Specificity | CRAMS ID | Differential Expression Status | Cell Line Expression | DE Support by Other Tools | Cell-Type Specificity Support by circSC |
|---|---|---|---|---|---|---|
chr3|138712207|138714719|-|2|circRNA|PIK3CB|NM_006219|8,7 | Not cell-type specific | N/A | Not differentially expressed | Not expressed in cell lines | Not differentially expressed | Not cell-type specific |
chr3|140963126|140974005|+|3|circRNA|SLC25A36|NM_001104647|4,5,6 | Not cell-type specific | N/A | Not differentially expressed | HT29,LoVo,SW480 | Not differentially expressed | Not cell-type specific |
chr3|12379703|12417154|+|5|circRNA|PPARG|ENST00000397010.6|3,4,5,6,7 | Not cell-type specific | N/A | Not differentially expressed | HT29,LoVo | Not differentially expressed | Not cell-type specific |
chr3|12392613|12392752|+|1|circRNA|PPARG|ENST00000397010.6|5 | Not cell-type specific | N/A | Not differentially expressed | Not expressed in cell lines | Not differentially expressed | Not cell-type specific |
chr3|123931101|123949132|-|7|circRNA|CCDC14|NM_001308317|11,10,9,8,7,6,5 | Not cell-type specific | N/A | Not differentially expressed | HT29,LoVo,SW480,SW620 | Not differentially expressed | Not cell-type specific |
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