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CircRNA Cell-Type Specific Expression
Use criteria below to search among 11,682 circRNAs:
*Click CircRNA to view comprehensive information in new page.
*CircRNA IDs are unique identifiers assigned to each circRNA in the format of
“chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices”
*Myeloid Cells from Lee et al. and Macrophages from Li et al. are considered the same cell type; Endothelial Cells and Fibroblasts from Li et al. are considered as subtypes of Stromal Cells from Lee et al. Cell-type specificity is based on the consensus of both models.
CircRNA* | Cell-Type Specificity | CRAMS ID | Differential Expression Status | Cell Line Expression | DE Support by Other Tools | Cell-Type Specificity Support by circSC |
|---|---|---|---|---|---|---|
chr9|5732387|5757451|+|11|circRNA|RIC1|ENST00000251879.10|7,8,9,10,11,12,13,14,15,16,17 | Myeloid Cells | N/A | Not differentially expressed | Not expressed in cell lines | Not differentially expressed | Not supported |
chr9|5787060|5787593|-|2|circRNA|ERMP1|ENST00000462592.5|15,14 | Not cell-type specific | N/A | Not differentially expressed | HCT116,SW480 | Not differentially expressed | Not cell-type specific |
chr9|5787060|5831028|-|14|circRNA|ERMP1|ENST00000462592.5|15,14,13,12,11,10,9,8,7,6,5,4,3,2 | Not cell-type specific | N/A | Not differentially expressed | HCT116 | Not differentially expressed | Not cell-type specific |
chr9|5825091|5831028|-|2|circRNA|ERMP1|ENST00000462592.5|3,2 | Not cell-type specific | N/A | Not differentially expressed | HT29,LoVo | Not differentially expressed | Not cell-type specific |
chr9|5944870|5988545|-|4|circRNA|KIAA2026|ENST00000399933.7|5,4,3,2 | Not cell-type specific | N/A | Not differentially expressed | HT29 | Not differentially expressed | Not cell-type specific |
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