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CircRNA Cell-Type Specific Expression
Use criteria below to search among 11,682 circRNAs:
*Click CircRNA to view comprehensive information in new page.
*CircRNA IDs are unique identifiers assigned to each circRNA in the format of
“chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices”
*Myeloid Cells from Lee et al. and Macrophages from Li et al. are considered the same cell type; Endothelial Cells and Fibroblasts from Li et al. are considered as subtypes of Stromal Cells from Lee et al. Cell-type specificity is based on the consensus of both models.
CircRNA* | Cell-Type Specificity | CRAMS ID | Differential Expression Status | Cell Line Expression | DE Support by Other Tools | Cell-Type Specificity Support by circSC |
|---|---|---|---|---|---|---|
chr3|179601729|179602797|-|2|circRNA|MRPL47|ENST00000476781.5|3,2 | Not cell-type specific | N/A | Not differentially expressed | Not expressed in cell lines | Not differentially expressed | Not cell-type specific |
chr3|179614970|179618521|+|4|circRNA|NDUFB5|ENST00000259037.7|2,3,4,5 | Not cell-type specific | N/A | Not differentially expressed | HCT116,SW480,SW620 | Not differentially expressed | Not cell-type specific |
chr3|179681877|179708957|+|5|circRNA|USP13|ENST00000263966.7|2,3,4,5,6 | Not cell-type specific | N/A | Not differentially expressed | HCT116,LoVo | Not differentially expressed | Not cell-type specific |
chr3|179701007|179730709|+|7|circRNA|USP13|ENST00000263966.7|4,5,6,7,8,9,10 | Not cell-type specific | N/A | Not differentially expressed | SW620 | Not differentially expressed | Not cell-type specific |
chr3|179764001|179765848|+|2|circRNA|USP13|ENST00000263966.7|18,19 | Not cell-type specific | N/A | Not differentially expressed | HCT116,HT29,SW480,SW620 | Not differentially expressed | Not cell-type specific |
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