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CircRNA Cell-Type Specific Expression
Use criteria below to search among 11,682 circRNAs:
*Click CircRNA to view comprehensive information in new page.
*CircRNA IDs are unique identifiers assigned to each circRNA in the format of
“chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices”
*Myeloid Cells from Lee et al. and Macrophages from Li et al. are considered the same cell type; Endothelial Cells and Fibroblasts from Li et al. are considered as subtypes of Stromal Cells from Lee et al. Cell-type specificity is based on the consensus of both models.
CircRNA* | Cell-Type Specificity | CRAMS ID | Differential Expression Status | Cell Line Expression | DE Support by Other Tools | Cell-Type Specificity Support by circSC |
|---|---|---|---|---|---|---|
chr3|196806578|196807914|+|2|circRNA|PAK2|ENST00000327134.7|6,7 | Not cell-type specific | N/A | Not differentially expressed | HCT116,HT29,LoVo,SW480,SW620 | Not differentially expressed | Not cell-type specific |
chr3|196806578|196812851|+|5|circRNA|PAK2|ENST00000327134.7|6,7,8,9,10 | Not cell-type specific | N/A | Not differentially expressed | LoVo,SW480,SW620 | Not differentially expressed | Not cell-type specific |
chr3|196806578|196818156|+|7|circRNA|PAK2|ENST00000327134.7|6,7,8,9,10,11,12 | Not cell-type specific | N/A | Not differentially expressed | HT29 | Not differentially expressed | Not cell-type specific |
chr3|196885150|196886694|+|1|circRNA|SENP5|ENST00000445299.6|2 | Not cell-type specific | N/A | Not differentially expressed | HCT116,HT29,LoVo,SW620 | Not differentially expressed | Not cell-type specific |
chr3|197076585|197085756|-|3|circRNA|DLG1|ENST00000346964.6|19,18,17 | Not cell-type specific | N/A | Not differentially expressed | LoVo,SW620 | Not differentially expressed | Not cell-type specific |
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