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CircRNA Cell-Type Specific Expression
Use criteria below to search among 11,682 circRNAs:
*Click CircRNA to view comprehensive information in new page.
*CircRNA IDs are unique identifiers assigned to each circRNA in the format of
“chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices”
*Myeloid Cells from Lee et al. and Macrophages from Li et al. are considered the same cell type; Endothelial Cells and Fibroblasts from Li et al. are considered as subtypes of Stromal Cells from Lee et al. Cell-type specificity is based on the consensus of both models.
CircRNA* | Cell-Type Specificity | CRAMS ID | Differential Expression Status | Cell Line Expression | DE Support by Other Tools | Cell-Type Specificity Support by circSC |
|---|---|---|---|---|---|---|
chr9|77794462|77815770|-|3|circRNA|GNAQ|ENST00000286548.8|5,4,3 | Not cell-type specific | N/A | Not differentially expressed | HT29,SW480,SW620 | Not differentially expressed | Not cell-type specific |
chr9|78254835|78264316|+|3|circRNA|CEP78|ENST00000424347.6|11,12,13 | Not cell-type specific | N/A | Not differentially expressed | HCT116,SW480,SW620 | Not differentially expressed | Not cell-type specific |
chr9|78301953|78308583|+|4|circRNA|PSAT1|NM_021154|3,4,5,6 | Not cell-type specific | N/A | Not differentially expressed | Not expressed in cell lines | Not differentially expressed | Not cell-type specific |
chr9|79709622|79721888|+|4|circRNA|TLE4|ENST00000376552.6|14,15,16,17 | Not cell-type specific | N/A | Not differentially expressed | SW620 | Not differentially expressed | Not cell-type specific |
chr9|81610219|81620557|-|6|circRNA|TLE1|ENST00000376499.7|14,13,12,11,10,9 | Not cell-type specific | N/A | Not differentially expressed | HT29,SW620 | Not differentially expressed | Not cell-type specific |
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