top of page

TMECircDB

The Maher Lab | Washington University

CircRNA Cell-Type Specific Expression

Use criteria below to search among 11,682 circRNAs:

*Click CircRNA to view comprehensive information in new page.

​

​*CircRNA IDs are unique identifiers assigned to each circRNA in the format of

“chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices”

​

*Myeloid Cells from Lee et al. and Macrophages from Li et al. are considered the same cell type; Endothelial Cells and Fibroblasts from Li et al. are considered as subtypes of Stromal Cells from Lee et al. Cell-type specificity is based on the consensus of both models.

CircRNA*
Cell-Type Specificity
CRAMS ID
Differential Expression Status
Cell Line Expression
DE Support by Other Tools
Cell-Type Specificity Support by circSC
chr4|139703454|139704196|+|2|circRNA|MGST2|ENST00000616265.4|4,5
Not cell-type specific
N/A
Not differentially expressed
Not expressed in cell lines
Not differentially expressed
Not cell-type specific
chr4|139889356|139890967|-|2|circRNA|MAML3|NM_018717|3,2
Not cell-type specific
N/A
Not differentially expressed
HCT116,HT29,LoVo,SW480,SW620
Not differentially expressed
Not cell-type specific
chr4|142082030|142086256|-|2|circRNA|INPP4B|ENST00000513000.5|26,25
Not cell-type specific
N/A
Not differentially expressed
Not expressed in cell lines
Not differentially expressed
Not cell-type specific
chr4|142402937|142462726|-|5|circRNA|INPP4B|ENST00000513000.5|8,7,6,5,4
Not cell-type specific
N/A
Not differentially expressed
Not expressed in cell lines
Not differentially expressed
Not cell-type specific
chr4|143380611|143415771|+|2|circRNA|GAB1|ENST00000515366.5|2,3
Myeloid Cells
N/A
Not differentially expressed
Not expressed in cell lines
Not differentially expressed
Not supported
Page 1 of 1

Follow Us:

  • Twitter Clean
bottom of page