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CircRNA Cell-Type Specific Expression
Use criteria below to search among 11,682 circRNAs:
*Click CircRNA to view comprehensive information in new page.
*CircRNA IDs are unique identifiers assigned to each circRNA in the format of
“chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices”
*Myeloid Cells from Lee et al. and Macrophages from Li et al. are considered the same cell type; Endothelial Cells and Fibroblasts from Li et al. are considered as subtypes of Stromal Cells from Lee et al. Cell-type specificity is based on the consensus of both models.
CircRNA* | Cell-Type Specificity | CRAMS ID | Differential Expression Status | Cell Line Expression | DE Support by Other Tools | Cell-Type Specificity Support by circSC |
|---|---|---|---|---|---|---|
chr4|67581304|67593356|+|4|circRNA|STAP1|ENST00000265404.6|5,6,7,8 | Not cell-type specific | N/A | Not differentially expressed | Not expressed in cell lines | Not differentially expressed | Not cell-type specific |
chr4|67631707|67641228|-|8|circRNA|UBA6|ENST00000322244.9|25,24,23,22,21,20,19,18 | Not cell-type specific | N/A | Not differentially expressed | Not expressed in cell lines | Not differentially expressed | Not cell-type specific |
chr4|67662188|67682213|-|11|circRNA|UBA6|ENST00000322244.9|13,12,11,10,9,8,7,6,5,4,3 | Not cell-type specific | N/A | Not differentially expressed | HCT116 | Not differentially expressed | Not cell-type specific |
chr4|67728539|67755255|+|4|circRNA|UBA6-AS1|ENST00000500538.6|3,4,5,6 | Stromal cells | N/A | Not differentially expressed | Not expressed in cell lines | Not differentially expressed | Not supported |
chr4|6923372|6967424|+|2|circRNA|TBC1D14|ENST00000448507.5|2,3 | Not cell-type specific | N/A | Not differentially expressed | HCT116,HT29,LoVo,SW480,SW620 | Not differentially expressed | Not cell-type specific |
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