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CircRNA Cell-Type Specific Expression
Use criteria below to search among 11,682 circRNAs:
*Click CircRNA to view comprehensive information in new page.
*CircRNA IDs are unique identifiers assigned to each circRNA in the format of
“chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices”
*Myeloid Cells from Lee et al. and Macrophages from Li et al. are considered the same cell type; Endothelial Cells and Fibroblasts from Li et al. are considered as subtypes of Stromal Cells from Lee et al. Cell-type specificity is based on the consensus of both models.
CircRNA* | Cell-Type Specificity | CRAMS ID | Differential Expression Status | Cell Line Expression | DE Support by Other Tools | Cell-Type Specificity Support by circSC |
|---|---|---|---|---|---|---|
chr5|128147621|128171746|+|9|circRNA|SLC12A2|ENST00000262461.6|11,12,13,14,15,16,17,18,19 | Not cell-type specific | N/A | Not differentially expressed | Not expressed in cell lines | Not differentially expressed | Not cell-type specific |
chr5|129104955|129107062|+|3|circRNA|ISOC1|NM_016048|2,3,4 | Not cell-type specific | N/A | Not differentially expressed | HCT116,HT29,LoVo,SW480,SW620 | Not differentially expressed | Not cell-type specific |
chr5|129526283|129528677|+|3|circRNA|ADAMTS19|ENST00000274487.8|4,5,6 | Not cell-type specific | N/A | Not differentially expressed | LoVo,SW620 | Not differentially expressed | Not cell-type specific |
chr5|131255094|131316144|+|2|circRNA|CDC42SE2|ENST00000502840.5|2,3 | Not cell-type specific | N/A | Not differentially expressed | Not expressed in cell lines | Not differentially expressed | Not cell-type specific |
chr5|131430858|131433658|-|2|circRNA|RAPGEF6|ENST00000509018.5|26,25 | Not cell-type specific | N/A | Not differentially expressed | LoVo | Not differentially expressed | Not cell-type specific |
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