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CircRNA Cell-Type Specific Expression
Use criteria below to search among 11,682 circRNAs:
*Click CircRNA to view comprehensive information in new page.
*CircRNA IDs are unique identifiers assigned to each circRNA in the format of
“chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices”
*Myeloid Cells from Lee et al. and Macrophages from Li et al. are considered the same cell type; Endothelial Cells and Fibroblasts from Li et al. are considered as subtypes of Stromal Cells from Lee et al. Cell-type specificity is based on the consensus of both models.
CircRNA* | Cell-Type Specificity | CRAMS ID | Differential Expression Status | Cell Line Expression | DE Support by Other Tools | Cell-Type Specificity Support by circSC |
|---|---|---|---|---|---|---|
chr5|171221757|171242820|+|3|circRNA|RANBP17|ENST00000523189.5|22,23,24 | Myeloid Cells | N/A | Not differentially expressed | SW620 | Not differentially expressed | Not supported |
chr5|171391304|171392978|+|4|circRNA|NPM1|ENST00000517671.5|4,5,6,7 | Not cell-type specific | N/A | Not differentially expressed | HCT116,HT29,SW620 | Not differentially expressed | Not cell-type specific |
chr5|171868609|171900100|-|9|circRNA|FBXW11|ENST00000296933.10|12,11,10,9,8,7,6,5,4 | Not cell-type specific | N/A | Not differentially expressed | Not expressed in cell lines | Not differentially expressed | Not cell-type specific |
chr5|171876284|171878129|-|2|circRNA|FBXW11|ENST00000296933.10|8,7 | Not cell-type specific | N/A | Not differentially expressed | Not expressed in cell lines | Not differentially expressed | Not cell-type specific |
chr5|172055587|172057473|-|2|circRNA|STK10|NM_005990|16,15 | Not cell-type specific | N/A | Not differentially expressed | Not expressed in cell lines | Not differentially expressed | Not cell-type specific |
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