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CircRNA Cell-Type Specific Expression
Use criteria below to search among 11,682 circRNAs:
*Click CircRNA to view comprehensive information in new page.
*CircRNA IDs are unique identifiers assigned to each circRNA in the format of
“chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices”
*Myeloid Cells from Lee et al. and Macrophages from Li et al. are considered the same cell type; Endothelial Cells and Fibroblasts from Li et al. are considered as subtypes of Stromal Cells from Lee et al. Cell-type specificity is based on the consensus of both models.
CircRNA* | Cell-Type Specificity | CRAMS ID | Differential Expression Status | Cell Line Expression | DE Support by Other Tools | Cell-Type Specificity Support by circSC |
|---|---|---|---|---|---|---|
chr5|43294055|43297166|-|4|circRNA|HMGCS1|NM_001098272|8,7,6,5 | Not cell-type specific | N/A | Not differentially expressed | HCT116,HT29,LoVo,SW620 | Not differentially expressed | Not cell-type specific |
chr5|43294690|43297166|-|3|circRNA|HMGCS1|NM_001098272|7,6,5 | Not cell-type specific | N/A | Not differentially expressed | Not expressed in cell lines | Not differentially expressed | Not cell-type specific |
chr5|43295751|43297166|-|2|circRNA|HMGCS1|NM_001098272|6,5 | Not cell-type specific | N/A | Not differentially expressed | HCT116,HT29 | Not differentially expressed | Not cell-type specific |
chr5|43609142|43677806|+|18|circRNA|NNT|NM_012343|2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19 | Not cell-type specific | N/A | Not differentially expressed | SW620 | Not differentially expressed | Not cell-type specific |
chr5|43615847|43628387|+|4|circRNA|NNT|NM_012343|4,5,6,7 | Not cell-type specific | N/A | Not differentially expressed | Not expressed in cell lines | Not differentially expressed | Not cell-type specific |
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