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CircRNA Cell-Type Specific Expression
Use criteria below to search among 11,682 circRNAs:
*Click CircRNA to view comprehensive information in new page.
*CircRNA IDs are unique identifiers assigned to each circRNA in the format of
“chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices”
*Myeloid Cells from Lee et al. and Macrophages from Li et al. are considered the same cell type; Endothelial Cells and Fibroblasts from Li et al. are considered as subtypes of Stromal Cells from Lee et al. Cell-type specificity is based on the consensus of both models.
CircRNA* | Cell-Type Specificity | CRAMS ID | Differential Expression Status | Cell Line Expression | DE Support by Other Tools | Cell-Type Specificity Support by circSC |
|---|---|---|---|---|---|---|
chr5|66759708|66788794|+|2|circRNA|MAST4|NM_001290228|2,3 | Not cell-type specific | N/A | Not differentially expressed | Not expressed in cell lines | Not differentially expressed | Not cell-type specific |
chr5|67131951|67133496|+|1|ciRNA|MAST4|NM_001164664|16 | Not cell-type specific | N/A | Not differentially expressed | Not expressed in cell lines | Not differentially expressed | Not cell-type specific |
chr5|6737509|6746427|+|6|circRNA|PAPD7|ENST00000230859.7|2,3,4,5,6,7 | Not cell-type specific | N/A | Not differentially expressed | HCT116,HT29,LoVo,SW620 | Not differentially expressed | Not cell-type specific |
chr5|68226289|68227009|+|1|circRNA|PIK3R1|ENST00000521381.5|2 | Not cell-type specific | N/A | Not differentially expressed | HT29,LoVo | Not differentially expressed | Not cell-type specific |
chr5|69104630|69114496|+|4|circRNA|SLC30A5|ENST00000396591.7|4,5,6,7 | Not cell-type specific | N/A | Not differentially expressed | LoVo,SW620 | Not differentially expressed | Not cell-type specific |
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