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CircRNA Cell-Type Specific Expression
Use criteria below to search among 11,682 circRNAs:
*Click CircRNA to view comprehensive information in new page.
*CircRNA IDs are unique identifiers assigned to each circRNA in the format of
“chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices”
*Myeloid Cells from Lee et al. and Macrophages from Li et al. are considered the same cell type; Endothelial Cells and Fibroblasts from Li et al. are considered as subtypes of Stromal Cells from Lee et al. Cell-type specificity is based on the consensus of both models.
CircRNA* | Cell-Type Specificity | CRAMS ID | Differential Expression Status | Cell Line Expression | DE Support by Other Tools | Cell-Type Specificity Support by circSC |
|---|---|---|---|---|---|---|
chr5|74745677|74751493|-|5|circRNA|GFM2|ENST00000296805.7|10,9,8,7,6 | Not cell-type specific | N/A | Not differentially expressed | HCT116,SW480 | Not differentially expressed | Not cell-type specific |
chr5|74750578|74751493|-|2|circRNA|GFM2|ENST00000296805.7|7,6 | Not cell-type specific | N/A | Not differentially expressed | Not expressed in cell lines | Not differentially expressed | Not cell-type specific |
chr5|74813839|74841679|-|4|circRNA|FAM169A|ENST00000514215.5|5,4,3,2 | Not cell-type specific | N/A | Not differentially expressed | HCT116,LoVo,SW480,SW620 | Not differentially expressed | Not cell-type specific |
chr5|74834425|74841679|-|4|circRNA|FAM169A|ENST00000389156.8|5,4,3,2 | Not cell-type specific | N/A | Not differentially expressed | HCT116,LoVo,SW480,SW620 | Not differentially expressed | Not cell-type specific |
chr5|75343852|75351602|+|9|circRNA|HMGCR|ENST00000511206.5|3,4,5,6,7,8,9,10,11 | Not cell-type specific | N/A | Not differentially expressed | Not expressed in cell lines | Not differentially expressed | Not cell-type specific |
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