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CircRNA Cell-Type Specific Expression
Use criteria below to search among 11,682 circRNAs:
*Click CircRNA to view comprehensive information in new page.
*CircRNA IDs are unique identifiers assigned to each circRNA in the format of
“chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices”
*Myeloid Cells from Lee et al. and Macrophages from Li et al. are considered the same cell type; Endothelial Cells and Fibroblasts from Li et al. are considered as subtypes of Stromal Cells from Lee et al. Cell-type specificity is based on the consensus of both models.
CircRNA* | Cell-Type Specificity | CRAMS ID | Differential Expression Status | Cell Line Expression | DE Support by Other Tools | Cell-Type Specificity Support by circSC |
|---|---|---|---|---|---|---|
chr5|94628810|94630743|+|3|circRNA|ANKRD32|ENST00000265140.9|2,3,4 | Not cell-type specific | N/A | Not differentially expressed | HCT116,HT29,LoVo,SW480,SW620 | Not differentially expressed | Not cell-type specific |
chr5|94643272|94651845|+|3|circRNA|ANKRD32|ENST00000265140.9|5,6,7 | Myeloid Cells | N/A | Not differentially expressed | Not expressed in cell lines | Not differentially expressed | Not supported |
chr5|94643272|94654752|+|5|circRNA|ANKRD32|ENST00000265140.9|5,6,7,8,9 | Not cell-type specific | N/A | Not differentially expressed | HCT116,HT29,LoVo,SW480,SW620 | Not differentially expressed | Not cell-type specific |
chr5|94779109|94924021|-|13|circRNA|MCTP1|ENST00000515393.5|19,18,17,16,15,14,13,12,11,10,9,8,7 | Not cell-type specific | N/A | Not differentially expressed | Not expressed in cell lines | Not differentially expressed | Not cell-type specific |
chr5|94868332|94924021|-|11|circRNA|MCTP1|ENST00000515393.5|17,16,15,14,13,12,11,10,9,8,7 | Not cell-type specific | N/A | Not differentially expressed | HT29 | Not differentially expressed | Not cell-type specific |
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