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CircRNA Cell-Type Specific Expression
Use criteria below to search among 11,682 circRNAs:
*Click CircRNA to view comprehensive information in new page.
*CircRNA IDs are unique identifiers assigned to each circRNA in the format of
“chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices”
*Myeloid Cells from Lee et al. and Macrophages from Li et al. are considered the same cell type; Endothelial Cells and Fibroblasts from Li et al. are considered as subtypes of Stromal Cells from Lee et al. Cell-type specificity is based on the consensus of both models.
CircRNA* | Cell-Type Specificity | CRAMS ID | Differential Expression Status | Cell Line Expression | DE Support by Other Tools | Cell-Type Specificity Support by circSC |
|---|---|---|---|---|---|---|
chrX|9939194|9944913|+|2|circRNA|SHROOM2|NM_001649|8,9 | Not cell-type specific | N/A | Not differentially expressed | SW620 | Not differentially expressed | Not cell-type specific |
chrY|12909359|12913062|+|4|circRNA|DDX3Y|NM_001122665|4,5,6,7 | Not cell-type specific | N/A | Not differentially expressed | HCT116,LoVo | Not differentially expressed | Not cell-type specific |
chrY|13260277|13302991|-|4|circRNA|UTY|ENST00000382896.8|27,26,25,24 | Not cell-type specific | N/A | Not differentially expressed | Not expressed in cell lines | Not differentially expressed | Not cell-type specific |
chrY|13297706|13336335|-|10|circRNA|UTY|ENST00000382896.8|26,25,24,23,22,21,20,19,18,17 | Not cell-type specific | N/A | Not differentially expressed | LoVo | Not differentially expressed | Not cell-type specific |
chrY|13323554|13366393|-|11|circRNA|UTY|ENST00000382896.8|20,19,18,17,16,15,14,13,12,11,10 | Myeloid Cells | N/A | Not differentially expressed | HCT116 | Not differentially expressed | Not supported |
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