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CircRNA Cell-Type Specific Expression
Use criteria below to search among 11,682 circRNAs:
*Click CircRNA to view comprehensive information in new page.
*CircRNA IDs are unique identifiers assigned to each circRNA in the format of
“chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices”
*Myeloid Cells from Lee et al. and Macrophages from Li et al. are considered the same cell type; Endothelial Cells and Fibroblasts from Li et al. are considered as subtypes of Stromal Cells from Lee et al. Cell-type specificity is based on the consensus of both models.
CircRNA* | Cell-Type Specificity | CRAMS ID | Differential Expression Status | Cell Line Expression | DE Support by Other Tools | Cell-Type Specificity Support by circSC |
|---|---|---|---|---|---|---|
chr5|95906522|95919545|-|3|circRNA|ELL2|ENST00000237853.8|5,4,3 | Not cell-type specific | N/A | Not differentially expressed | Not expressed in cell lines | Not differentially expressed | Not cell-type specific |
chr5|96722638|96730860|+|6|circRNA|CAST|ENST00000505143.5|4,5,6,7,8,9 | Not cell-type specific | N/A | Not differentially expressed | HT29,LoVo,SW620 | Not differentially expressed | Not cell-type specific |
chr5|96912636|96915769|+|3|circRNA|ERAP2|ENST00000437043.7|16,17,18 | Not cell-type specific | N/A | Not differentially expressed | Not expressed in cell lines | Not differentially expressed | Not cell-type specific |
chr5|98779579|98780088|+|1|circRNA|RGMB|ENST00000308234.11|4 | Epithelial cells | N/A | Not differentially expressed | HCT116 | Not differentially expressed | Not supported |
chr5|98879551|98881375|-|3|circRNA|CHD1|ENST00000614616.4|23,22,21 | Not cell-type specific | N/A | Not differentially expressed | HCT116,HT29,LoVo,SW480,SW620 | Not differentially expressed | Not cell-type specific |
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