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CircRNA Cell-Type Specific Expression
Use criteria below to search among 11,682 circRNAs:
*Click CircRNA to view comprehensive information in new page.
*CircRNA IDs are unique identifiers assigned to each circRNA in the format of
“chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices”
*Myeloid Cells from Lee et al. and Macrophages from Li et al. are considered the same cell type; Endothelial Cells and Fibroblasts from Li et al. are considered as subtypes of Stromal Cells from Lee et al. Cell-type specificity is based on the consensus of both models.
CircRNA* | Cell-Type Specificity | CRAMS ID | Differential Expression Status | Cell Line Expression | DE Support by Other Tools | Cell-Type Specificity Support by circSC |
|---|---|---|---|---|---|---|
chr6|149578821|149580723|+|3|circRNA|GINM1|ENST00000367419.9|4,5,6 | Stromal cells | N/A | Not differentially expressed | Not expressed in cell lines | Not differentially expressed | Not supported |
chr6|149578821|149582603|+|4|circRNA|GINM1|ENST00000367419.9|4,5,6,7 | Not cell-type specific | N/A | Not differentially expressed | SW480 | Not differentially expressed | Not cell-type specific |
chr6|149597506|149598350|-|2|circRNA|KATNA1|ENST00000335647.9|8,7 | Not cell-type specific | N/A | Not differentially expressed | Not expressed in cell lines | Not differentially expressed | Not cell-type specific |
chr6|149676259|149676737|-|2|circRNA|LATS1|NR_073033|8,7 | Not cell-type specific | N/A | Not differentially expressed | HCT116,HT29 | Not differentially expressed | Not cell-type specific |
chr6|149676259|149680457|-|3|circRNA|LATS1|NR_073033|8,7,6 | Not cell-type specific | N/A | Not differentially expressed | HCT116,HT29,LoVo,SW480 | Not differentially expressed | Not cell-type specific |
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