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CircRNA Cell-Type Specific Expression
Use criteria below to search among 11,682 circRNAs:
*Click CircRNA to view comprehensive information in new page.
*CircRNA IDs are unique identifiers assigned to each circRNA in the format of
“chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices”
*Myeloid Cells from Lee et al. and Macrophages from Li et al. are considered the same cell type; Endothelial Cells and Fibroblasts from Li et al. are considered as subtypes of Stromal Cells from Lee et al. Cell-type specificity is based on the consensus of both models.
CircRNA* | Cell-Type Specificity | CRAMS ID | Differential Expression Status | Cell Line Expression | DE Support by Other Tools | Cell-Type Specificity Support by circSC |
|---|---|---|---|---|---|---|
chr6|83018972|83038485|-|4|circRNA|UBE3D|ENST00000237186.10|8,7,6,5 | Not cell-type specific | N/A | Not differentially expressed | HCT116,SW620 | Not differentially expressed | Not cell-type specific |
chr6|83018972|83044659|-|5|circRNA|UBE3D|ENST00000237186.10|8,7,6,5,4 | Not cell-type specific | N/A | Not differentially expressed | HCT116,HT29,LoVo,SW480,SW620 | Not differentially expressed | Not cell-type specific |
chr6|83096730|83100886|+|3|circRNA|DOPEY1|ENST00000237163.9|2,3,4 | Not cell-type specific | N/A | Not differentially expressed | Not expressed in cell lines | Not differentially expressed | Not cell-type specific |
chr6|83096924|83100886|+|2|circRNA|DOPEY1|ENST00000237163.9|3,4 | Not cell-type specific | N/A | Not differentially expressed | HCT116,SW480,SW620 | Not differentially expressed | Not cell-type specific |
chr6|83172059|83174373|-|1|ciRNA|PGM3|ENST00000513973.5|10 | Not cell-type specific | N/A | Not differentially expressed | Not expressed in cell lines | Not differentially expressed | Not cell-type specific |
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