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CircRNA Cell-Type Specific Expression
Use criteria below to search among 11,682 circRNAs:
*Click CircRNA to view comprehensive information in new page.
*CircRNA IDs are unique identifiers assigned to each circRNA in the format of
“chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices”
*Myeloid Cells from Lee et al. and Macrophages from Li et al. are considered the same cell type; Endothelial Cells and Fibroblasts from Li et al. are considered as subtypes of Stromal Cells from Lee et al. Cell-type specificity is based on the consensus of both models.
CircRNA* | Cell-Type Specificity | CRAMS ID | Differential Expression Status | Cell Line Expression | DE Support by Other Tools | Cell-Type Specificity Support by circSC |
|---|---|---|---|---|---|---|
chr7|131429032|131445903|+|4|circRNA|MKLN1|ENST00000421797.6|10,11,12,13 | Not cell-type specific | N/A | Not differentially expressed | HCT116,LoVo,SW480,SW620 | Not differentially expressed | Not cell-type specific |
chr7|133274981|133289116|+|2|circRNA|EXOC4|NM_001037126|2,3 | Myeloid Cells | N/A | Not differentially expressed | SW480,SW620 | Not differentially expressed | Not supported |
chr7|133305876|133356573|+|3|circRNA|EXOC4|NM_001037126|4,5,6 | Not cell-type specific | N/A | Not differentially expressed | SW620 | Not differentially expressed | Not cell-type specific |
chr7|133317283|133375002|+|3|circRNA|EXOC4|NM_001037126|5,6,7 | Not cell-type specific | N/A | Not differentially expressed | HT29,SW480,SW620 | Not differentially expressed | Not cell-type specific |
chr7|134137022|134183853|+|10|circRNA|LRGUK|ENST00000285928.2|2,3,4,5,6,7,8,9,10,11 | Not cell-type specific | N/A | Not differentially expressed | SW480 | Not differentially expressed | Not cell-type specific |
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