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TMECircDB

The Maher Lab | Washington University

CircRNA Cell-Type Specific Expression

Use criteria below to search among 11,682 circRNAs:

*Click CircRNA to view comprehensive information in new page.

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​*CircRNA IDs are unique identifiers assigned to each circRNA in the format of

“chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices”

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*Myeloid Cells from Lee et al. and Macrophages from Li et al. are considered the same cell type; Endothelial Cells and Fibroblasts from Li et al. are considered as subtypes of Stromal Cells from Lee et al. Cell-type specificity is based on the consensus of both models.

CircRNA*
Cell-Type Specificity
CRAMS ID
Differential Expression Status
Cell Line Expression
DE Support by Other Tools
Cell-Type Specificity Support by circSC
chr7|143875988|143876622|-|1|circRNA|TCAF1|NM_014719|2
Not cell-type specific
N/A
Not differentially expressed
HCT116,LoVo
Not differentially expressed
Not cell-type specific
chr7|144531063|144623261|-|5|circRNA|TPK1|ENST00000482940.5|11,10,9,8,7
Myeloid Cells
N/A
Not differentially expressed
Not expressed in cell lines
Not differentially expressed
Not supported
chr7|144548490|144667846|-|6|circRNA|TPK1|ENST00000482940.5|10,9,8,7,6,5
Not cell-type specific
N/A
Not differentially expressed
Not expressed in cell lines
Not differentially expressed
Not cell-type specific
chr7|144591422|144765951|-|5|circRNA|TPK1|ENST00000360057.7|7,6,5,4,3
Not cell-type specific
N/A
Not differentially expressed
Not expressed in cell lines
Not differentially expressed
Not cell-type specific
chr7|148759638|148760332|+|1|ciRNA|CUL1|ENST00000409469.5|6
Myeloid Cells
N/A
Not differentially expressed
Not expressed in cell lines
Not differentially expressed
Not supported
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