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CircRNA Cell-Type Specific Expression
Use criteria below to search among 11,682 circRNAs:
*Click CircRNA to view comprehensive information in new page.
*CircRNA IDs are unique identifiers assigned to each circRNA in the format of
“chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices”
*Myeloid Cells from Lee et al. and Macrophages from Li et al. are considered the same cell type; Endothelial Cells and Fibroblasts from Li et al. are considered as subtypes of Stromal Cells from Lee et al. Cell-type specificity is based on the consensus of both models.
CircRNA* | Cell-Type Specificity | CRAMS ID | Differential Expression Status | Cell Line Expression | DE Support by Other Tools | Cell-Type Specificity Support by circSC |
|---|---|---|---|---|---|---|
chr7|151355767|151356222|+|2|circRNA|NUB1|ENST00000413040.6|6,7 | Not cell-type specific | N/A | Not differentially expressed | Not expressed in cell lines | Not differentially expressed | Not cell-type specific |
chr7|151470570|151491014|-|6|circRNA|RHEB|ENST00000262187.9|7,6,5,4,3,2 | Not cell-type specific | N/A | Not differentially expressed | HT29,SW480 | Not differentially expressed | Not cell-type specific |
chr7|151477332|151498180|-|4|circRNA|RHEB|ENST00000478470.5|5,4,3,2 | Not cell-type specific | N/A | Not differentially expressed | HCT116,HT29,LoVo | Not differentially expressed | Not cell-type specific |
chr7|151484736|151498180|-|3|circRNA|RHEB|ENST00000478470.5|4,3,2 | Not cell-type specific | N/A | Not differentially expressed | HT29,LoVo,SW480,SW620 | Not differentially expressed | Not cell-type specific |
chr7|151564077|151568842|-|4|circRNA|PRKAG2|ENST00000287878.8|14,13,12,11 | Not cell-type specific | N/A | Not differentially expressed | HCT116,SW480 | Not differentially expressed | Not cell-type specific |
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