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CircRNA Cell-Type Specific Expression
Use criteria below to search among 11,682 circRNAs:
*Click CircRNA to view comprehensive information in new page.
*CircRNA IDs are unique identifiers assigned to each circRNA in the format of
“chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices”
*Myeloid Cells from Lee et al. and Macrophages from Li et al. are considered the same cell type; Endothelial Cells and Fibroblasts from Li et al. are considered as subtypes of Stromal Cells from Lee et al. Cell-type specificity is based on the consensus of both models.
CircRNA* | Cell-Type Specificity | CRAMS ID | Differential Expression Status | Cell Line Expression | DE Support by Other Tools | Cell-Type Specificity Support by circSC |
|---|---|---|---|---|---|---|
chr7|39987598|40063100|+|8|circRNA|CDK13|ENST00000181839.8|2,3,4,5,6,7,8,9 | Not cell-type specific | N/A | Not differentially expressed | HT29,SW480,SW620 | Not differentially expressed | Not cell-type specific |
chr7|40078004|40078851|+|2|circRNA|CDK13|ENST00000181839.8|10,11 | Not cell-type specific | N/A | Not differentially expressed | HT29 | Not differentially expressed | Not cell-type specific |
chr7|40180946|40195060|+|5|circRNA|SUGCT|NM_001193311|2,3,4,5,6 | Not cell-type specific | N/A | Not differentially expressed | HCT116 | Not differentially expressed | Not cell-type specific |
chr7|40188494|40195060|+|3|circRNA|SUGCT|NM_001193311|4,5,6 | Not cell-type specific | N/A | Not differentially expressed | Not expressed in cell lines | Not differentially expressed | Not cell-type specific |
chr7|42023467|42026412|-|3|circRNA|GLI3|ENST00000395925.7|10,9,8 | Not cell-type specific | N/A | Not differentially expressed | SW620 | Not differentially expressed | Not cell-type specific |
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