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CircRNA Cell-Type Specific Expression
Use criteria below to search among 11,682 circRNAs:
*Click CircRNA to view comprehensive information in new page.
*CircRNA IDs are unique identifiers assigned to each circRNA in the format of
“chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices”
*Myeloid Cells from Lee et al. and Macrophages from Li et al. are considered the same cell type; Endothelial Cells and Fibroblasts from Li et al. are considered as subtypes of Stromal Cells from Lee et al. Cell-type specificity is based on the consensus of both models.
CircRNA* | Cell-Type Specificity | CRAMS ID | Differential Expression Status | Cell Line Expression | DE Support by Other Tools | Cell-Type Specificity Support by circSC |
|---|---|---|---|---|---|---|
chr7|73686635|73687095|+|3|circRNA|WBSCR22|ENST00000265758.6|3,4,5 | Not cell-type specific | N/A | Not differentially expressed | HCT116,HT29,LoVo,SW480,SW620 | Not differentially expressed | Not cell-type specific |
chr7|74105874|74109036|+|5|circRNA|LIMK1|ENST00000418310.5|6,7,8,9,10 | Not cell-type specific | N/A | Not differentially expressed | Not expressed in cell lines | Not differentially expressed | Not cell-type specific |
chr7|74235531|74246763|-|6|circRNA|RFC2|NM_001278791|10,9,8,7,6,5 | Not cell-type specific | N/A | Not differentially expressed | SW480,SW620 | Not differentially expressed | Not cell-type specific |
chr7|74239937|74249118|-|3|circRNA|RFC2|ENST00000352131.7|6,5,4 | Myeloid Cells | N/A | Not differentially expressed | HT29,LoVo,SW620 | Not differentially expressed | Not supported |
chr7|74356409|74357477|+|2|circRNA|CLIP2|ENST00000361545.9|5,6 | Not cell-type specific | N/A | Not differentially expressed | HCT116,LoVo,SW480,SW620 | Not differentially expressed | Not cell-type specific |
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