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CircRNA Cell-Type Specific Expression
Use criteria below to search among 11,682 circRNAs:
*Click CircRNA to view comprehensive information in new page.
*CircRNA IDs are unique identifiers assigned to each circRNA in the format of
“chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices”
*Myeloid Cells from Lee et al. and Macrophages from Li et al. are considered the same cell type; Endothelial Cells and Fibroblasts from Li et al. are considered as subtypes of Stromal Cells from Lee et al. Cell-type specificity is based on the consensus of both models.
CircRNA* | Cell-Type Specificity | CRAMS ID | Differential Expression Status | Cell Line Expression | DE Support by Other Tools | Cell-Type Specificity Support by circSC |
|---|---|---|---|---|---|---|
chr7|80798091|80828745|-|9|circRNA|SEMA3C|ENST00000265361.7|11,10,9,8,7,6,5,4,3 | Not cell-type specific | N/A | Not differentially expressed | LoVo | Not differentially expressed | Not cell-type specific |
chr7|80800756|80805758|-|4|circRNA|SEMA3C|ENST00000265361.7|10,9,8,7 | Myeloid Cells | N/A | Not differentially expressed | Not expressed in cell lines | Not differentially expressed | Not supported |
chr7|81968886|81982627|-|6|circRNA|CACNA2D1|ENST00000356860.7|29,28,27,26,25,24 | Not cell-type specific | N/A | Not differentially expressed | Not expressed in cell lines | Not differentially expressed | Not cell-type specific |
chr7|8218304|8236005|-|5|circRNA|ICA1|ENST00000402384.7|6,5,4,3,2 | Not cell-type specific | N/A | Not differentially expressed | HCT116,HT29,LoVo,SW480 | Not differentially expressed | Not cell-type specific |
chr7|82902650|82916873|-|3|circRNA|PCLO|NM_033026|9,8,7 | Myeloid Cells | N/A | Not differentially expressed | SW480 | Not differentially expressed | Not supported |
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