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CircRNA Cell-Type Specific Expression
Use criteria below to search among 11,682 circRNAs:
*Click CircRNA to view comprehensive information in new page.
*CircRNA IDs are unique identifiers assigned to each circRNA in the format of
“chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices”
*Myeloid Cells from Lee et al. and Macrophages from Li et al. are considered the same cell type; Endothelial Cells and Fibroblasts from Li et al. are considered as subtypes of Stromal Cells from Lee et al. Cell-type specificity is based on the consensus of both models.
CircRNA* | Cell-Type Specificity | CRAMS ID | Differential Expression Status | Cell Line Expression | DE Support by Other Tools | Cell-Type Specificity Support by circSC |
|---|---|---|---|---|---|---|
chrX|45069578|45090864|+|10|circRNA|KDM6A|NM_001291415|18,19,20,21,22,23,24,25,26,27 | Not cell-type specific | N/A | Not differentially expressed | Not expressed in cell lines | Not differentially expressed | Not cell-type specific |
chrX|45076696|45090864|+|9|circRNA|KDM6A|NM_001291415|19,20,21,22,23,24,25,26,27 | Not cell-type specific | N/A | Not differentially expressed | SW480,SW620 | Not differentially expressed | Not cell-type specific |
chrX|45082575|45090864|+|6|circRNA|KDM6A|NM_001291415|22,23,24,25,26,27 | Myeloid Cells | N/A | Not differentially expressed | Not expressed in cell lines | Not differentially expressed | Not supported |
chrX|46984883|46998277|+|3|circRNA|JADE3|ENST00000424392.5|2,3,4 | Not cell-type specific | N/A | Not differentially expressed | LoVo | Not differentially expressed | Not cell-type specific |
chrX|47583536|47583664|+|1|ciRNA|TIMP1|NM_003254|2 | Myeloid Cells | N/A | Not differentially expressed | Not expressed in cell lines | Not differentially expressed | Not supported |
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