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Peptides from upstream, downstream and out-of-frame ORFs
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Peptide | Transcripts | Type | Modified peptide | Gene | Start | End | Strand | MS score | TE score | #Species with ortholog | Kozak motif | TIS motif | Domains | Protein length(aa) | Molecular weight | Isoelectric point | Cancers |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
VGSTSGQTGQR | XM_017012411.2 | Upstream_ORF | n[145]VGSTSGQTGQR | PPP1R9A | 95243110 | 95243223 | + | 0 | 0 | 0 | + | - | 0 | 37 | 4.1 | 7.81 | OV, EOGC |
VGSVLNK | ENST00000525490.5 | Noncoding_RNA | n[145]VGSVLNK | ZDHHC13 | 19169997 | 19170101 | + | 0 | 0 | 0 | + | + | 0 | 34 | 3.76 | 8.95 | BRCA, CCRC, HCC, LUAD, EOGC, UCEC |
VGSVLNK | ENST00000525490.5 | Noncoding_RNA | n[230]VGSVLNK | ZDHHC13 | 19169997 | 19170101 | + | 0 | 0 | 0 | + | + | 0 | 34 | 3.76 | 8.95 | BRCA, CCRC, HCC, LUAD, EOGC, UCEC |
VGTAATSLAAAGAR | ENST00000334793.5, NM_004474.3 | Upstream_ORF | FOXD2 | 47437343 | 47437744 | + | 0 | 0 | 1 | - | - | 0 | 133 | 12.85 | 12.65 | PRAD, BRCA, EOGC, OV, CCRC, LUAD | |
VGTAATSLAAAGAR | ENST00000334793.5, NM_004474.3 | Upstream_ORF | n[145]VGTAATSLAAAGAR | FOXD2 | 47437343 | 47437744 | + | 0 | 0 | 1 | - | - | 0 | 133 | 12.85 | 12.65 | PRAD, BRCA, EOGC, OV, CCRC, LUAD |
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