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Neoantigens from upstream, downstream and out-of-frame ORFs in breast and ovarian cancer
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Gene | Transcript | Peptide | Modified peptide | Chr | Peptide length | Type | Start | End | Strand | Transcript start | Transcript end | Assigned Modifications | Cancer |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
PRPF40B | XM_006719325.4 | MITSDPMSCSLLR | n[145]M[147]ITSDPM[147]SCSLLR | 12 | 13 | Out-of-frame | 49644179 | 49644448 | + | 3897 | 4167 | 1M(15.9949), 7M(15.9949), 9C(57.0215), N-term(144.1021) | BRCA |
PRPF40B | XM_011538135.3 | MITSDPMSCSLLR | n[145]M[147]ITSDPMSCSLLR | 12 | 13 | 3'UTR | 49644179 | 49644448 | + | 3995 | 4265 | 1M(15.9949), 9C(57.0215), N-term(144.1021) | BRCA |
PRPF40B | XM_011538135.3 | MITSDPMSCSLLR | n[145]M[147]ITSDPMSCSLLR | 12 | 13 | 3'UTR | 49644179 | 49644448 | + | 3995 | 4265 | 1M(15.9949), 9C(57.0215), N-term(144.1021) | OV |
PRPF40B | XM_011538135.3 | MITSDPMSCSLLR | n[145]M[147]ITSDPM[147]SCSLLR | 12 | 13 | 3'UTR | 49644179 | 49644448 | + | 3995 | 4265 | 1M(15.9949), 7M(15.9949), 9C(57.0215), N-term(144.1021) | BRCA |
PRPF40B | XM_011538136.3 | MITSDPMSCSLLR | n[145]M[147]ITSDPMSCSLLR | 12 | 13 | 3'UTR | 49644179 | 49644448 | + | 3992 | 4262 | 1M(15.9949), 9C(57.0215), N-term(144.1021) | BRCA |
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