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Neoantigens from upstream, downstream and out-of-frame ORFs in breast and ovarian cancer
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Gene | Transcript | Peptide | Modified peptide | Chr | Peptide length | Type | Start | End | Strand | Transcript start | Transcript end | Assigned Modifications | Cancer |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
PKD1L3 | XM_024450256.1 | VIQIPSPLIYK | n[145]VIQIPSPLIYK | 16 | 11 | Out-of-frame | 71984161 | 71986327 | - | 1151 | 1265 | 11K(144.1021), N-term(144.1021) | BRCA |
PKD1L3 | XM_024450258.1 | VIQIPSPLIYK | n[145]VIQIPSPLIYK | 16 | 11 | Out-of-frame | 71984161 | 71986327 | - | 369 | 483 | 11K(144.1021), N-term(144.1021) | BRCA |
PKD1L3 | XM_024450259.1 | VIQIPSPLIYK | n[145]VIQIPSPLIYK | 16 | 11 | Out-of-frame | 71984161 | 71986327 | - | 891 | 1005 | 11K(144.1021), N-term(144.1021) | BRCA |
PKD1L3 | XM_024450260.1 | VIQIPSPLIYK | n[145]VIQIPSPLIYK | 16 | 11 | Out-of-frame | 71984161 | 71986327 | - | 229 | 343 | 11K(144.1021), N-term(144.1021) | BRCA |
PRPF40B | ENST00000261897.5 | MITSDPMSCSLLR | n[145]M[147]ITSDPMSCSLLR | 12 | 13 | Out-of-frame | 49644179 | 49644448 | + | 3115 | 3385 | 1M(15.9949), 9C(57.0215), N-term(144.1021) | BRCA |
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