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Neoantigens from upstream, downstream and out-of-frame ORFs in breast and ovarian cancer
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Gene | Transcript | Peptide | Modified peptide | Chr | Peptide length | Type | Start | End | Strand | Transcript start | Transcript end | Assigned Modifications | Cancer |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ARHGAP24 | XM_024454238.1 | RMTFPTPGTMK | n[145]RMTFPTPGTMK | 4 | 11 | Out-of-frame | 85995288 | 85995596 | + | 1538 | 1847 | 11K(144.1021), N-term(144.1021) | BRCA |
ARHGAP24 | XM_024454239.1 | RMTFPTPGTMK | n[145]RMTFPTPGTMK | 4 | 11 | Out-of-frame | 85995288 | 85995596 | + | 6507 | 6816 | 11K(144.1021), N-term(144.1021) | BRCA |
DCUN1D3 | ENST00000324344.8 | EMLGGSLSPMPR | n[145]EMLGGSLSPM[147]PR | 16 | 12 | Out-of-frame | 20860338 | 20862483 | - | 342 | 750 | 10M(15.9949), N-term(144.1021) | BRCA |
DCUN1D3 | ENST00000324344.8 | EMLGGSLSPMPR | n[145]EMLGGSLSPM[147]PR | 16 | 12 | Out-of-frame | 20860338 | 20862483 | - | 342 | 750 | 10M(15.9949), N-term(144.1021) | OV |
DCUN1D3 | ENST00000324344.8 | EMLGGSLSPMPR | n[145]EM[147]LGGSLSPM[147]PR | 16 | 12 | Out-of-frame | 20860338 | 20862483 | - | 342 | 750 | 10M(15.9949), 2M(15.9949), N-term(144.1021) | BRCA |
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