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Epitopes from from upstream, downstream and out-of-frame ORFs in breast and ovarian cancer
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Gene | Transcript | Peptide | Modified peptide | Peptide length | Core peptide | HLA-allele | Cancer | Chr | Start | End | NetMHCpan prediction score | Gene has predicted canoncial neoantigens | Low expression in normal tissue | Strand | Type |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
WDR86 | XM_011516144.3 | SSFHHLLTK | n[145]SSFHHLLTK | 9 | SSFHHLLTK | HLA-A11:01 | OV | 7 | 151378518 | 151378733 | 0.987445 | No | no | - | 3'UTR |
WDR86 | XM_011516145.3 | SSFHHLLTK | n[145]SSFHHLLTK | 9 | SSFHHLLTK | HLA-A11:01 | OV | 7 | 151378518 | 151378733 | 0.987445 | No | no | - | 3'UTR |
WDR86 | XM_011516147.3 | SSFHHLLTK | n[145]SSFHHLLTK | 9 | SSFHHLLTK | HLA-A11:01 | OV | 7 | 151378518 | 151378733 | 0.987445 | No | no | - | 3'UTR |
WDR86 | XM_011516151.3 | SSFHHLLTK | n[145]SSFHHLLTK | 9 | SSFHHLLTK | HLA-A11:01 | OV | 7 | 151378518 | 151378733 | 0.987445 | No | no | - | 3'UTR |
TFCP2L1 | XM_017003904.1 | SVQALATVQR | n[145]SVQALATVQR | 10 | SVQALTVQR | HLA-A33:03 | OV | 2 | 121240586 | 121248216 | 0.604766 | Yes | yes | - | Out-of-frame |
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