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Epitopes from from upstream, downstream and out-of-frame ORFs in breast and ovarian cancer
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Gene | Transcript | Peptide | Modified peptide | Peptide length | Core peptide | HLA-allele | Cancer | Chr | Start | End | NetMHCpan prediction score | Gene has predicted canoncial neoantigens | Low expression in normal tissue | Strand | Type |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
MSN | XM_017029545.1 | NLSSSPLTK | n[145]NLSSSPLTK | 9 | NLSSSPLTK | HLA-A11:01 | OV | X | 65733237 | 65735387 | 0.581329 | Yes | no | + | Out-of-frame |
MSN | XM_017029546.1 | NLSSSPLTK | n[145]NLSSSPLTK | 9 | NLSSSPLTK | HLA-A11:01 | OV | X | 65733237 | 65735387 | 0.581329 | Yes | no | + | Out-of-frame |
EPHB2 | ENST00000400191.7 | SFASQIPDPR | n[145]SFASQIPDPR | 10 | SFASQIPPR | HLA-A33:03 | OV | 1 | 22921010 | 22921198 | 0.458808 | Yes | yes | + | 3'UTR |
EPHB2 | NM_001309192.1 | SFASQIPDPR | n[145]SFASQIPDPR | 10 | SFASQIPPR | HLA-A33:03 | OV | 1 | 22921010 | 22921198 | 0.458808 | Yes | yes | + | 3'UTR |
EPHB2 | NM_001309193.1 | SFASQIPDPR | n[145]SFASQIPDPR | 10 | SFASQIPPR | HLA-A33:03 | OV | 1 | 22921010 | 22921198 | 0.458808 | Yes | yes | + | 3'UTR |
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