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Epitopes from from upstream, downstream and out-of-frame ORFs in breast and ovarian cancer
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Gene | Transcript | Peptide | Modified peptide | Peptide length | Core peptide | HLA-allele | Cancer | Chr | Start | End | NetMHCpan prediction score | Gene has predicted canoncial neoantigens | Low expression in normal tissue | Strand | Type |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
CYP19A1 | ENST00000559980.5 | MLIWPTSMWK | n[145]M[147]LIWPTSM[147]WK | 10 | MLIWPTSMK | HLA-A03:01 | OV | 15 | 51255599 | 51337837 | 0.680223 | Yes | yes | - | 5'UTR |
CYP19A1 | ENST00000559980.5 | MLIWPTSMWK | n[145]M[147]LIWPTSM[147]WK | 10 | MLIWPTSMK | HLA-A03:01 | OV | 15 | 51255599 | 51337837 | 0.680223 | Yes | yes | - | 5'UTR |
FUT9 | ENST00000302103.5 | MSMHLIYFK | n[145]M[147]SM[147]HLIYFK | 9 | MSMHLIYFK | HLA-A11:01 | BRCA | 6 | 96209693 | 96209806 | 0.869711 | Yes | yes | + | 3'UTR |
FUT9 | NM_006581.3 | MSMHLIYFK | n[145]M[147]SM[147]HLIYFK | 9 | MSMHLIYFK | HLA-A11:01 | BRCA | 6 | 96209693 | 96209806 | 0.869711 | Yes | yes | + | 3'UTR |
FUT9 | XM_011535383.2 | MSMHLIYFK | n[145]M[147]SM[147]HLIYFK | 9 | MSMHLIYFK | HLA-A11:01 | BRCA | 6 | 96209693 | 96209806 | 0.869711 | Yes | yes | + | 3'UTR |
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