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Epitopes from from upstream, downstream and out-of-frame ORFs in breast and ovarian cancer
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Gene | Transcript | Peptide | Modified peptide | Peptide length | Core peptide | HLA-allele | Cancer | Chr | Start | End | NetMHCpan prediction score | Gene has predicted canoncial neoantigens | Low expression in normal tissue | Strand | Type |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
TMEM106B | NM_001134232.1 | VSFSFAFAFK | n[145]VSFSFAFAFK | 10 | VSFSFAFFK | HLA-A11:01 | OV | 7 | 12211262 | 12214866 | 0.546699 | Yes | no | + | 5'UTR |
DTWD1 | ENST00000251250.7 | VTLMPMGSK | n[145]VTLMPM[147]GSK | 9 | VTLMPMGSK | HLA-A11:01 | OV | 15 | 49652752 | 49653087 | 0.754335 | Yes | no | + | 3'UTR |
DTWD1 | ENST00000251250.7 | VTLMPMGSK | n[145]VTLM[147]PMGSK | 9 | VTLMPMGSK | HLA-A11:01 | OV | 15 | 49652752 | 49653087 | 0.754335 | Yes | no | + | 3'UTR |
DTWD1 | ENST00000251250.7 | VTLMPMGSK | n[145]VTLM[147]PM[147]GSK | 9 | VTLMPMGSK | HLA-A11:01 | OV | 15 | 49652752 | 49653087 | 0.754335 | Yes | no | + | 3'UTR |
RNF145 | ENST00000274542.6 | WRSGLLQEK | n[145]WRSGLLQEK | 9 | WRSGLLQEK | HLA-B27:05 | OV | 5 | 159203493 | 159207767 | 0.658528 | No | no | - | Out-of-frame |
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