Epitopes from from upstream, downstream and out-of-frame ORFs in breast and ovarian cancer

Use criteria below to search

Gene	Transcript	Peptide	Modified peptide	Peptide length	Core peptide	HLA-allele	Cancer	Chr	Start	End	NetMHCpan prediction score	Gene has predicted canoncial neoantigens	Low expression in normal tissue	Strand	Type
MC5R	ENST00000589410.2	ATFQDPMSK	n[145]ATFQDPMSK	9	ATFQDPMSK	HLA-A11:01	OV	18	13825809	13825940	0.990407	Yes	yes	+	Out-of-frame
MC5R	NM_005913.2	ATFQDPMSK	n[145]ATFQDPMSK	9	ATFQDPMSK	HLA-A11:01	OV	18	13825809	13825940	0.990407	Yes	yes	+	Out-of-frame
TBX18	XM_017011473.2	EVYHPILEK	n[145]EVYHPILEK	9	EVYHPILEK	HLA-A11:01	OV	6	84667573	84667665	0.92642	Yes	no	-	Out-of-frame
TBX18	XM_017011473.2	EVYHPILEK	n[145]EVYHPILEK	9	EVYHPILEK	HLA-A11:01	OV	6	84667573	84667665	0.92642	Yes	no	-	Out-of-frame
TBX18	XM_017011473.2	EVYHPILEK	n[145]EVYHPILEK	9	EVYHPILEK	HLA-A26:01	OV	6	84667573	84667665	0.232291	Yes	no	-	Out-of-frame

Page 1 of 1

The Maher Lab