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Epitopes from from upstream, downstream and out-of-frame ORFs in breast and ovarian cancer
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Gene | Transcript | Peptide | Modified peptide | Peptide length | Core peptide | HLA-allele | Cancer | Chr | Start | End | NetMHCpan prediction score | Gene has predicted canoncial neoantigens | Low expression in normal tissue | Strand | Type |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
LPGAT1 | ENST00000366997.8 | ATFAITVLQR | n[145]ATFAITVLQR | 10 | ATFAITVQR | HLA-A33:03 | OV | 1 | 211747383 | 211747532 | 0.581116 | Yes | no | - | 3'UTR |
LPGAT1 | NM_001320808.1 | ATFAITVLQR | n[145]ATFAITVLQR | 10 | ATFAITVQR | HLA-A33:03 | OV | 1 | 211747383 | 211747532 | 0.581116 | Yes | no | - | 3'UTR |
LPGAT1 | NM_014873.2 | ATFAITVLQR | n[145]ATFAITVLQR | 10 | ATFAITVQR | HLA-A33:03 | OV | 1 | 211747383 | 211747532 | 0.581116 | Yes | no | - | 3'UTR |
LPGAT1 | XM_005273362.3 | ATFAITVLQR | n[145]ATFAITVLQR | 10 | ATFAITVQR | HLA-A33:03 | OV | 1 | 211747383 | 211747532 | 0.581116 | Yes | no | - | 3'UTR |
LPGAT1 | XM_011510228.3 | ATFAITVLQR | n[145]ATFAITVLQR | 10 | ATFAITVQR | HLA-A33:03 | OV | 1 | 211747383 | 211747532 | 0.581116 | Yes | no | - | 3'UTR |
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