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Epitopes from from upstream, downstream and out-of-frame ORFs in breast and ovarian cancer
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Gene | Transcript | Peptide | Modified peptide | Peptide length | Core peptide | HLA-allele | Cancer | Chr | Start | End | NetMHCpan prediction score | Gene has predicted canoncial neoantigens | Low expression in normal tissue | Strand | Type |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
PARVA | NM_018222.5 | ALQQGPLNFK | n[145]ALQQGPLNFK | 10 | AQQGPLNFK | HLA-A11:01 | OV | 11 | 12528982 | 12529110 | 0.68426 | Yes | no | + | 3'UTR |
PARVA | XM_005253015.3 | ALQQGPLNFK | n[145]ALQQGPLNFK | 10 | AQQGPLNFK | HLA-A11:01 | OV | 11 | 12528982 | 12529110 | 0.68426 | Yes | no | + | 3'UTR |
VRTN | ENST00000256362.4 | ARLGTLLEK | n[145]ARLGTLLEK | 9 | ARLGTLLEK | HLA-B27:05 | OV | 14 | 74348497 | 74348589 | 0.923441 | Yes | yes | + | 5'UTR |
VRTN | NM_018228.2 | ARLGTLLEK | n[145]ARLGTLLEK | 9 | ARLGTLLEK | HLA-B27:05 | OV | 14 | 74348497 | 74348589 | 0.923441 | Yes | yes | + | 5'UTR |
ALG10B | ENST00000308742.8 | ASGALQLPLLK | n[145]ASGALQLPLLK | 11 | ASLQLPLLK | HLA-A11:01 | OV | 12 | 38324874 | 38324984 | 0.544522 | Yes | no | + | 3'UTR |
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