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Epitopes from from upstream, downstream and out-of-frame ORFs in breast and ovarian cancer
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Gene | Transcript | Peptide | Modified peptide | Peptide length | Core peptide | HLA-allele | Cancer | Chr | Start | End | NetMHCpan prediction score | Gene has predicted canoncial neoantigens | Low expression in normal tissue | Strand | Type |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
DRGX | NM_001276451.1 | HTIQMSSPEK | n[145]HTIQM[147]SSPEK | 10 | HTIQSSPEK | HLA-A11:01 | OV | 10 | 49390162 | 49391222 | 0.645435 | Yes | yes | - | Out-of-frame |
DRGX | XM_011540089.3 | HTIQMSSPEK | n[145]HTIQM[147]SSPEK | 10 | HTIQSSPEK | HLA-A11:01 | OV | 10 | 49390162 | 49391222 | 0.645435 | Yes | yes | - | Out-of-frame |
DRGX | ENST00000374139.6 | HTIQMSSPEK | n[145]HTIQM[147]SSPEK | 10 | HTIQSSPEK | HLA-A66:01 | OV | 10 | 49390162 | 49391222 | 0.201396 | Yes | yes | - | Out-of-frame |
DRGX | ENST00000434016.2 | HTIQMSSPEK | n[145]HTIQM[147]SSPEK | 10 | HTIQSSPEK | HLA-A66:01 | OV | 10 | 49390162 | 49391222 | 0.201396 | Yes | yes | - | Out-of-frame |
PTGIR | ENST00000291294.6 | AADAGTLAPK | n[145]AADAGTLAPK | 10 | AAAGTLAPK | HLA-A11:01 | OV | 19 | 46621106 | 46621207 | 0.483961 | Yes | no | - | 3'UTR |
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