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Epitopes from from upstream, downstream and out-of-frame ORFs in breast and ovarian cancer
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Gene | Transcript | Peptide | Modified peptide | Peptide length | Core peptide | HLA-allele | Cancer | Chr | Start | End | NetMHCpan prediction score | Gene has predicted canoncial neoantigens | Low expression in normal tissue | Strand | Type |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
CTR9 | ENST00000361367.6 | HIISPGYMRR | n[145]HIISPGYMRR | 10 | HIISPGYMR | HLA-A33:01 | BRCA | 11 | 10764597 | 10766416 | 0.446189 | Yes | no | + | Out-of-frame |
CTR9 | NM_001346279.1 | HIISPGYMRR | n[145]HIISPGYMRR | 10 | HIISPGYMR | HLA-A33:01 | BRCA | 11 | 10764597 | 10766416 | 0.446189 | Yes | no | + | Out-of-frame |
CTR9 | NM_014633.4 | HIISPGYMRR | n[145]HIISPGYMRR | 10 | HIISPGYMR | HLA-A33:01 | BRCA | 11 | 10764597 | 10766416 | 0.446189 | Yes | no | + | Out-of-frame |
CTR9 | ENST00000361367.6 | HIISPGYMRR | n[145]HIISPGYMRR | 10 | HIISPGYRR | HLA-A33:03 | BRCA | 11 | 10764597 | 10766416 | 0.715507 | Yes | no | + | Out-of-frame |
CTR9 | NM_001346279.1 | HIISPGYMRR | n[145]HIISPGYMRR | 10 | HIISPGYRR | HLA-A33:03 | BRCA | 11 | 10764597 | 10766416 | 0.715507 | Yes | no | + | Out-of-frame |
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