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Epitopes from from upstream, downstream and out-of-frame ORFs in breast and ovarian cancer
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Gene | Transcript | Peptide | Modified peptide | Peptide length | Core peptide | HLA-allele | Cancer | Chr | Start | End | NetMHCpan prediction score | Gene has predicted canoncial neoantigens | Low expression in normal tissue | Strand | Type |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
CYP19A1 | ENST00000559980.5 | MLIWPTSMWK | n[145]MLIWPTSM[147]WK | 10 | MLIWPTSMK | HLA-A03:01 | OV | 15 | 51255599 | 51337837 | 0.680223 | Yes | yes | - | 5'UTR |
CYP19A1 | ENST00000559980.5 | MLIWPTSMWK | n[145]MLIWPTSM[147]WK | 10 | MLIWPTSMK | HLA-A03:01 | OV | 15 | 51255599 | 51337837 | 0.680223 | Yes | yes | - | 5'UTR |
TBX18 | XM_017011473.2 | EVYHPILEK | n[145]EVYHPILEK | 9 | EVYHPILEK | HLA-A66:01 | OV | 6 | 84667573 | 84667665 | 0.911608 | Yes | no | - | Out-of-frame |
TBX18 | XM_017011473.2 | EVYHPILEK | n[145]EVYHPILEK | 9 | EVYHPILEK | HLA-A66:01 | OV | 6 | 84667573 | 84667665 | 0.911608 | Yes | no | - | Out-of-frame |
SEC62 | ENST00000337002.8 | FFAVPQNFR | n[145]FFAVPQNFR | 9 | FFAVPQNFR | HLA-A33:01 | OV | 3 | 169996080 | 169996214 | 0.694605 | Yes | no | + | 3'UTR |
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