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Epitopes from from upstream, downstream and out-of-frame ORFs in breast and ovarian cancer
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Gene | Transcript | Peptide | Modified peptide | Peptide length | Core peptide | HLA-allele | Cancer | Chr | Start | End | NetMHCpan prediction score | Gene has predicted canoncial neoantigens | Low expression in normal tissue | Strand | Type |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
CALCR | ENST00000649521.1 | KVFGLNILK | n[145]KVFGLNILK | 9 | KVFGLNILK | HLA-A30:01 | OV | 7 | 93472377 | 93479410 | 0.804383 | Yes | yes | - | Out-of-frame |
CALCR | NM_001164737.1 | KVFGLNILK | n[145]KVFGLNILK | 9 | KVFGLNILK | HLA-A30:01 | OV | 7 | 93472377 | 93479410 | 0.804383 | Yes | yes | - | Out-of-frame |
CALCR | NM_001164738.1 | KVFGLNILK | n[145]KVFGLNILK | 9 | KVFGLNILK | HLA-A30:01 | OV | 7 | 93472377 | 93479410 | 0.804383 | Yes | yes | - | Out-of-frame |
CALCR | NM_001742.3 | KVFGLNILK | n[145]KVFGLNILK | 9 | KVFGLNILK | HLA-A30:01 | OV | 7 | 93472377 | 93479410 | 0.804383 | Yes | yes | - | Out-of-frame |
OAS1 | XM_006719434.2 | LSAAEATPK | n[145]LSAAEATPK | 9 | LSAAEATPK | HLA-A11:01 | OV | 12 | 112919095 | 112919229 | 0.421828 | Yes | no | + | 3'UTR |
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