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McDonnell Genome Institute
Washington University
Transcript
lnc-SCRIB-1:2
Chromosome
chr8
Gene Name
lnc-SCRIB-1
Start
143765397
CPC Label
noncoding
End
143771863
Cancer
BRCA-HER2-enriched
Strand
-
Peptide
SQVGLGGAR
Modified Peptide
n[145]SQVGLGGAR
Peptide Length
9
ORF Length
323
Open Reading Frame (ORF)
LLAQPPRGLLLPAHRSQVGLGGARRSHRPLRATAPSPEATVHASEVGARSEPHPHHAPCFAISSPCLLPGPRLLRLPVLTSFCGVSICSRYSRRSSRRRASSLLARSCRKAPWIALAARSSAGPGVGRGSRGRVLASSHACCAPGSGAGPAPAPAPTEGPKRLSKPPARPSRGSRPQRPHEEAAREPGTRRGPRSAGTSPAPRRRGSCEPRRARSSGAPRNGEEGVLSPAGHPSLKAEGPSCIQAPASEGWTERGGPRPGRAHHSPAGLRRGRGAQGPRGSSVLSGSASPSPHRGCNGALSPSLEPPRSEEGAEERASGSALP
Conservation Score
1
PhyloCSF Frame 1
0
No. of Spectra
1
CPC Coding Probability
0.460468
PhyloCSF Frame 2
8.729
CNTI Index
coding
Max Probability
0.0697
PhyloCSF Frame 3
10.217
CNTI Score
0.760230961
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