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McDonnell Genome Institute
Washington University
Transcript
lnc-PCDH1-5:1
Chromosome
chr5
Gene Name
lnc-PCDH1-5
Start
141754933
CPC Label
noncoding
End
141831791
Cancer
BRCA-Basal-like
Strand
-
Peptide
IGHCLQINR
Modified Peptide
n[145]IGHCLQINR
Peptide Length
9
ORF Length
114
Open Reading Frame (ORF)
LPMPSSCSREVGKGQSMRLPRRTSLQIEIGDEGHSVPSIAKRIKERSRIGHCLQINRRGQCWGNDLHPGRVRKGAVLYWAPRRCTCTISFILTTTSLGRHYLCGSIWPMKRMKI
Conservation Score
0.156
PhyloCSF Frame 1
-3.88
No. of Spectra
109
CPC Coding Probability
0.106768
PhyloCSF Frame 2
-3.13
CNTI Index
noncoding
Max Probability
0.9986
PhyloCSF Frame 3
-4.196
CNTI Score
-0.308345518
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