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McDonnell Genome Institute
Washington University
Transcript
lnc-OR4F6-1:1
Chromosome
chr15
Gene Name
lnc-OR4F6-1
Start
101751031
CPC Label
coding
End
101773472
Cancer
BRCA-HER2-enriched
Strand
+
Peptide
EFIFSELLSNLYSRGNK
Modified Peptide
n[145]EFIFSELLSNLYSRGNK
Peptide Length
17
ORF Length
928
Open Reading Frame (ORF)
MCMHRLMGTKEFIFSELLSNLYSRGNKETLLEESAEQAQRRDEMLLLRAAVQPALAWEREDTRGGVGRAGRPRSSSSQSCCPNCTCVGTRRHSWRSRQSRHSGATRCCFSELLSNLHSRGNKKTLVEASAEQADQGVHLLRAAVQPVLAWEREDTRGGVGRAGRPRSSSSQSCCPTCTRVGTRRHSWRRRQSRQTKEFIFSELLSNLYSRGNEKTLVEASAEQADQGVHLLRAAVQPVLAWEREDTRGGVGRAGRPRSSSSQSCCPTCTRVGTRRHSWRRRQSRQTKEFIFSELLSNLHSRGNEKTLMEESAEQAQRRDETRVGRRRHSWRSRQSRQTKEFIFSELLSNLYSRRNLQTLVEESAEQAQRCDEMLLLRAAVQPALAWEREDTRGGVGRAGRPRSSSSQSCCPTCTRVGTRRHSWRSRPSRHSGVTRLAWEEEDTPGGVGRAGRPRSSSSRSCCPTCTRVGTCRHLWRSRQSRHSGATRCCFSELLSNLHWRGNEKTLVEASAEQADQGVHLLRAAVQPVLAWEREDTRGGVGRAGRPRSSSSQSCCPTCTRVGTRRHSWRRRQSRQTKEFIFSELLSKLHSRGNEKTLMEESAEQAQRCDETRVGRRRHSWRSRQSRQTKEFIFSELLSNLYSRRNLQTLVEESAEQAQRCDEMLLLRAAVQPALAWEQEDTRGGVGRAGRPRSSSSQSCCPTCTRVGTRRHSWRRRQSRQTKEFIFSDLLSNLHSRGNEKTLMEESAEQAQRRDETRMGRRRHSWRSRQSRQIKEFIFSELLSNLYSRRNLQTLVEESAEQAQRCDEMLLLRDAVQPALAWEREDTRGGVGRAGRPRSSSSQSCCPTCTRVGTSRHSWRRWQSRQTKEFIFSELLSNLHSRGNEKTLVEASAEQADQGVHLLRAAVQTALAWEREDTHGGVGRAGTEV
Conservation Score
1
PhyloCSF Frame 1
11.48
No. of Spectra
1
CPC Coding Probability
1
PhyloCSF Frame 2
11.5
CNTI Index
coding
Max Probability
0.8235
PhyloCSF Frame 3
10.908
CNTI Score
0.869123025
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