top of page
McDonnell Genome Institute
Washington University
Transcript
lnc-IRF1-2:1
Chromosome
chr5
Gene Name
lnc-IRF1-2
Start
132419415
CPC Label
noncoding
End
132426714
Cancer
BRCA-Luminal A
Strand
-
Peptide
LERRPLEDLDAR
Modified Peptide
n[145]LERRPLEDLDAR
Peptide Length
12
ORF Length
74
Open Reading Frame (ORF)
LERRPLEDLDARRGTRARSTHPVPTPAGPQTVSAWDPNTGSRVSKNSKISRSQAFLNNSSKLLHRAVVTRHCSK
Conservation Score
0.234
PhyloCSF Frame 1
-3.936
No. of Spectra
4
CPC Coding Probability
0.489599
PhyloCSF Frame 2
-3.275
CNTI Index
noncoding
Max Probability
0.9999
PhyloCSF Frame 3
0.169
CNTI Score
-0.351614992
bottom of page